[Statistics & Datascience]: PDZ-motif containing protein-protein interactions: Force-directed layout graph using Mike Bostock’s D3 library and javascript. The data is based on: [1] Pdzbase network dataset -- KONECT, October 2016. [ link to PDZ ] [2] Thijs Beuming, Lucy Skrabanek, Masha Y. Niv, Piali Mukherjee, and Harel Weinstein. PDZBase: A protein--protein interaction database for PDZ-domains. Bioinformatics, 21(6):827--828, 2005.
[Bioinformatics]: Feeding network in a lake: Dynamic chord diagram, javascript using the D3 library by Mike Bostock. The data is taken from: Almunia, J., G. Basterretxea, J. Aristegui, and R.E. Ulanowicz. (1999) Benthic- Pelagic switching in a coastal subtropical lagoon. Estuarine, Coastal and Shelf Science 49:363-384.
[Drug development]: Relation between HIV prevalence and GDP in several countries: Dynamic bubble plot using javascript and D3 from Mike Bostock. Data are taken from AIDSVu http://aidsvu.org/ and the world bank http://data.worldbank.org/ websites.
[Data Visualization&Layout]:
[Courses&Teaching]:Dynamic sunburst plot showing the first 10 medical subject headings (MESH) with 4 subcategories for the 2015 catalogue from the National Library of Medicine (NLM) extracted from MESH. Inspired by an example from Stephen Thomas‘ book „Data visualization with JavaScript“, 2015, ISBN: 978-1-59327-605-8 using javascript and the D3.js library from Mike Bostock.
